What a load of ******. The idea of friendly bacteria and unfriendly ones is an anthropomorphic nonsence loved by advertisers. In the gut of warm blooded creatures, such as ourselves and hens, there are a large number of bacteria. The largest number belong to the Escherichia coli species and for that reason E.coli are used in tests for faecal contamination. These are the normal gut flora in healthy animals. There are a few VTEC E.coli which are pathogenic (eg. O517:H7) because they 'inject' a toxic into the bloodstream which destroys blood cells which in turn damages the kidneys, but these are rarely found away from infected cattle, although they cause headlines if causing a human outbreak. The simplified role of the normal gut flora E.coli is to produce vitamin E and to control other bacteria by being able to deprive the others of food and space - hence the idea of competition. A good example is Clostridium difficile. You'll see this as a hospital aquired infection. In fact about 1 in 20 adults and up to a quarter of children have this bacteria in their gut and it doesn't cause any problems. When ill and given antibiotics the E.coli are damaged/killed and without competition, the C. difficile multiplies causing diarrhoea etc. Poor hygiene then allows the other 80% to become infected. E.coli can cause infections of wounds as can many common bacteria, but trying to remove them is nonsense. You need E.coli. Of the other bacteria mentioned in that link, Salmonella has been a major problem and now is controlled by vaccination of chickens and Clostridia are very common anaerobic bacteria which can cause illness in humans if they (or their toxins) are consumed. More commonly they are the cause of gas gangrene (in wounds) or botulism in wild water birds, but shouldn't be a worry for well kept hens. HTH