My vote is you try it and let us know how you get on...
I'm sure that's the right answer too
Wouldn't that just be mind-bendingly fiddly? Modules are made of flexi-plastic and MDPE pipe is rigid.
I'm very unsure about modules. Generally I grow-on into 9cm pots and then plant out, they give me a plant of a decent size that can hold for a week or two if spare-time / foul-weather delay me. They fit neatly into a hole made by a long handled bulb planter, so are quick to knock-out and bung-in.
Many years ago I pricked out direct to 9cm, but I had losses which i think were probably due to over-potting and the plants having too much water. Takes up a lot of bench space, early on, too.
So then I pricked out to 1" square modules, and potted on to 9cm. That works much better, except for aforementioned issue with half-potted-on trays wasting bench space. I fairly hate the flexibility of the flimsy modules too, huge amounts of root disturbance during potting on getting the seedlings out of the modules and normally the modules are wrecked too and I dislike the wastage of use-once-an-throw. Trying to be gentle when getting the seedlings out of flimsy modules resulted in a lot of time consumed (I grow thousands of plants from seed each year, so productivity is an issue I consider). I bought modules made from more rigid plastic last year, they have a 1/2" hole in the bottom and easy to push out a plug, whole, with the blunt end of a pencil. Much better, but the trays are huge (48 cells I think) so even more varieties-per-tray and wasted space with half-full modules after some potting on. I, now, reckon that they only suit nurserymen raising large quantities of plants who will have full trays of single varieties.
Filling the trays is OK-ish - chuck some compost on, level out, walk my fingers along the rows compressing lightly which finds any that have air pockets, top up and level off again and then ready for pricking out.
Filling individual pipe-segments may be a nightmare by comparison.
I am guessing??, experiment pending!, that I can push out pipe with a dowel of suitable diameter. I was expecting to use same diameter pipe for all, but maybe some taller than others (Alliums particularly). The one thought that bothers me is that modules / pots are tapered and pipe with be straight sided. They won't stack (I can live with that) but maybe it will make pushing-out harder / more root damage?? Need a test to discover that.